Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs11665003 | chr18:75861949 | T/C | 1.04E-5 | 111 | 38.23 | 49.6 | 17.9 | KM Plot |
THYM | rs11679809 | chr2:73624844 | C/T | 4.23E-6 | 109 | 38.13 | 41.77 | 12.9 | KM Plot |
THYM | rs11689588 | chr2:73773691 | A/G | 6.97E-5 | 110 | 37.63 | 46.27 | 32.7 | KM Plot |
THYM | rs117422624 | chr8:82689809 | C/A | 7.38E-5 | 112 | 41.77 | 41.33 | 22.5 | KM Plot |
THYM | rs118099652 | chr8:82690069 | A/G | 7.04E-5 | 112 | 42.25 | 36.4 | 22.5 | KM Plot |
THYM | rs118177013 | chr9:96996780 | G/A | 0 | 111 | 38.58 | 61.78 | 0.13 | KM Plot |
THYM | rs11862923 | chr16:24767303 | G/T | 4.28E-5 | 113 | 46.6 | 30.03 | 50.1 | KM Plot |
THYM | rs11862971 | chr16:24767574 | C/A | 4.28E-5 | 113 | 46.6 | 30.03 | 50.1 | KM Plot |
THYM | rs11899740 | chr2:73631212 | G/A | 7.81E-8 | 108 | 37.63 | 46.23 | 34.83 | KM Plot |
THYM | rs11900646 | chr2:33011348 | C/A | 0 | 112 | 46.6 | 32.35 | 0.13 | KM Plot |
THYM | rs11901650 | chr2:33008236 | T/C | 0 | 110 | 46.07 | 26.57 | 0.13 | KM Plot |
THYM | rs11980492 | chr7:76134236 | C/T | 2.57E-5 | 112 | 38.33 | 46.23 | 25.83 | KM Plot |
THYM | rs12022634 | chr1:45915922 | G/A | 3.06E-6 | 111 | 39.75 | 45.93 | 14.47 | KM Plot |
THYM | rs12127819 | chr1:227952758 | T/G | 7.14E-6 | 113 | 42.25 | 40.67 | 14.1 | KM Plot |
THYM | rs12141801 | chr1:227961403 | C/T | 7.66E-6 | 112 | 42.25 | 39.4 | 14.1 | KM Plot |